¼ cup olive oil3 red bell peppers, stem and seeds removed, thinly sliced1 large yellow or cooking onion, peeled, halved, and thinly sliced10 cloves garlic, peeled and thinly sliced½ teaspoon crushed red pepper flakes1 tablespoon chili powder1 teaspoon smoked or regular paprika2 whole jalapeno peppers, washed and pierced several times with a sharp knife1 can (14.5 ounces) fire roasted diced tomatoes1 can (28 ounces) whole tomatoes in juice4 stems fresh basil with the leaves, plus extra for garnish4 stems fresh oregano with the leaves, plus extra for garnish6 large eggs¾ cup ricotta cheese1 cup grated cheddar cheese¼ cup grated Parmesan cheeseKosher salt and black pepper